Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Smon_0871PFAM: NLP/P60 protein; KEGG: sun:SUN_2355 hypothetical protein. (175 aa)    
Predicted Functional Partners:
Smon_0870
KEGG: baa:BXB0107 hypothetical protein.
       0.773
Smon_0872
KEGG: Viral A-type inclusion protein repeat.
       0.611
Smon_0873
PFAM: OmpA/MotB domain protein; YadA domain protein; KEGG: lch:Lcho_0958 OmpA/MotB domain-containing protein.
  
   0.511
Smon_1380
KEGG: bha:BH3601 cell-division protein.
  
 
 0.421
Smon_0869
KEGG: cyclic nucleotide-binding domain containing protein.
       0.407
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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