Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Smon_0883KEGG: Viral A-type inclusion protein repeat. (349 aa)    
Predicted Functional Partners:
Smon_0882
Hypothetical protein; KEGG: swi:Swit_3697 P-type conjugative transfer protein TrbL.
       0.768
Smon_0884
PFAM: CagE TrbE VirB component of type IV transporter system; SMART: AAA ATPase; KEGG: mes:Meso_2321 ATPas.
       0.746
Smon_0885
Hypothetical protein.
       0.726
Smon_0886
Hypothetical protein.
       0.726
Smon_0887
KEGG: hypothetical protein.
       0.726
Smon_0888
PFAM: YadA domain protein; KEGG: cjj:CJJ81176_0079 hypothetical protein.
       0.679
Smon_0881
Hypothetical protein; KEGG: similar to RAB6-interacting protein 2.
       0.544
Smon_0889
Hypothetical protein; KEGG: ring-infested erythrocyte surface antigen.
       0.495
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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