Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Smon_0922PFAM: protein of unknown function DUF187; KEGG: bsu:BSU18280 hypothetical protein. (437 aa)    
Predicted Functional Partners:
Smon_0918
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dps:DP2271 deoxycytidylate deaminase.
       0.814
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.814
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
       0.814
Smon_0920
Arsenate reductase-like protein; PFAM: arsenate reductase and related; KEGG: bsu:BSU32810 hypothetical protein; Belongs to the ArsC family.
       0.786
Smon_0923
PFAM: O-methyltransferase family 3; KEGG: bcb:BCB4264_A4503 O-methyltransferase family protein.
       0.785
Smon_0916
KEGG: hypothetical protein.
       0.775
smc
SMC domain protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.775
Smon_0915
Conserved hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.602
Smon_0925
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_0207 oligopeptide ABC transporter, ATP-binding protein.
       0.591
Smon_0926
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: prw:PsycPRwf_0023 binding-protein-dependent transport systems inner membrane component.
       0.591
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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