Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Smon_0929PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: bcc:BCc_214 RluC; Belongs to the pseudouridine synthase RluA family. (280 aa)    
Predicted Functional Partners:
Smon_0933
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
    0.833
Smon_0931
PFAM: peptidase M16 domain protein; KEGG: wpi:WPa_0591 peptidase, M16 family; Belongs to the peptidase M16 family.
  
   0.826
cmk
TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: bsu:BSU22890 cytidylate kinase.
  
    0.821
Smon_0930
TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: rod shape-determining protein RodA; K05837 rod shape determining protein RodA; Belongs to the SEDS family.
       0.820
Smon_0932
PFAM: Colicin V production protein; KEGG: nis:NIS_1176 colicin V production protein.
  
    0.818
Smon_0935
PFAM: metallophosphoesterase; KEGG: bsu:BSU16970 hypothetical protein.
  
    0.793
rny
RNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
   
   0.622
obg
GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
 
 
 0.597
Smon_0928
PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bcy:Bcer98_1777 cold-shock DNA-binding domain- containing protein.
   
   0.596
Smon_0937
Hypothetical protein.
       0.572
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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