Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Smon_0961Hypothetical protein. (167 aa)    
Predicted Functional Partners:
Smon_0962
Hypothetical protein.
       0.773
Smon_0963
TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; peptidase S14 ClpP; KEGG: sus:Acid_7871 signal peptide peptidase SppA, 67K type.
       0.565
Smon_0964
PFAM: UvrD/REP helicase; KEGG: bcy:Bcer98_0285 ATP-dependent DNA helicase PcrA.
       0.544
Smon_0965
Hypothetical protein.
       0.544
Smon_0966
Hypothetical protein.
       0.544
Smon_0956
PFAM: protein of unknown function DUF328; KEGG: ftm:FTM_0239 hypothetical protein; Belongs to the UPF0246 family.
       0.470
Smon_0957
PFAM: methyltransferase small; Methyltransferase type 12; KEGG: bcz:BCZK0095 methyltransferase.
       0.470
Smon_0958
PFAM: GCN5-related N-acetyltransferase; KEGG: wsu:WS0070 hypothetical protein.
       0.470
pdxT
SNO glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
       0.470
pdxS
Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.
       0.470
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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