Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Smon_0978Hypothetical protein. (120 aa)    
Predicted Functional Partners:
Smon_0977
KEGG: hypothetical protein.
       0.773
Smon_0979
Hypothetical protein.
       0.596
Smon_0980
KEGG: hypothetical protein.
       0.577
Smon_0974
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cff:CFF8240_1101 ABC transport system ATP- binding protein.
       0.565
Smon_0975
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pub:SAR11_1237 iron(III) ABC transporter.
       0.565
Smon_0976
PFAM: extracellular solute-binding protein family 1; KEGG: abu:Abu_2005 putative iron-uptake ABC transporter, periplasmic iron-binding protein.
       0.565
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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