Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Smon_1016PFAM: protein of unknown function DUF81; KEGG: bcy:Bcer98_1177 hypothetical protein. (263 aa)    
Predicted Functional Partners:
Smon_1018
PFAM: HI0933 family protein; KEGG: abu:Abu_2167 HI0933-like protein.
  
    0.779
Smon_1017
KEGG: sse:Ssed_3266 putative uncharacterized dehydrogenase.
       0.775
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: sat:SYN_01723 phenylalanyl-tRNA synthetase beta chain.
     
 0.483
Smon_0212
PFAM: regulatory protein TetR; KEGG: bca:BCE_1210 TetR family transcriptional regulator.
 
  
 0.480
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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