Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Smon_1161Hypothetical protein. (81 aa)    
Predicted Functional Partners:
Smon_1162
Hypothetical protein.
       0.634
Smon_1159
PFAM: domain of unknown function DUF1738; KEGG: dps:DPPB22 related to DNA primase TraC.
       0.528
Smon_1163
KEGG: baa:BXB0107 hypothetical protein.
       0.524
Smon_1164
PFAM: NLP/P60 protein; KEGG: gbm:Gbem_0896 NLP/P60 protein.
       0.524
Smon_1158
KEGG: hypothetical protein.
       0.512
Smon_1157
PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I ATP-binding; KEGG: vfi:VF_B0046 DNA topoisomerase III.
       0.449
Smon_1165
KEGG: SET-domain protein.
       0.410
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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