Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Smon_1202PFAM: integrase family protein; KEGG: tdn:Suden_0800 phage integrase. (346 aa)    
Predicted Functional Partners:
Smon_1201
Hypothetical protein.
       0.773
Smon_1200
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: vfi:VF_A0582 transcriptional repressor RstR.
       0.599
Smon_0450
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bsu:BSU18850 hypothetical protein.
 
  
 0.543
Smon_1163
KEGG: baa:BXB0107 hypothetical protein.
 
   
 0.464
Smon_0870
KEGG: baa:BXB0107 hypothetical protein.
 
   
 0.450
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.442
Smon_1198
PFAM: replication initiator A domain protein; KEGG: bcb:BCB4264_A3622 replication protein, putative.
 
     0.430
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.420
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
   
    0.405
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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