Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Smon_1248PFAM: periplasmic solute binding protein; KEGG: pfo:Pfl01_3927 periplasmic solute binding protein. (297 aa)    
Predicted Functional Partners:
Smon_0307
PFAM: ABC-3 protein; KEGG: psb:Psyr_1949 hypothetical protein.
 
 
 0.974
Smon_0306
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppf:Pput_1967 ABC transporter related.
 
 
 0.965
Smon_1249
KEGG: ecq:ECED1_2500 conserved hypothetical protein from phage origin.
       0.786
Smon_0224
PFAM: ABC-3 protein; KEGG: bsu:BSU30750 manganese ABC transporter membrane protein.
 
  
 0.751
Smon_1250
Hypothetical protein.
       0.749
Smon_0225
PFAM: ABC-3 protein; KEGG: bsu:BSU30740 manganese ABC transporter.
 
  
 0.728
Smon_0223
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU30760 manganese ABC transporter ATP- binding protein.
 
  
 0.722
Smon_1247
KEGG: vco:VC0395_A0515 N-acetylglucosamine-6- phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
       0.506
Smon_0046
KEGG: dno:DNO_1110 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein.
     
 0.505
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.468
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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