Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Smon_1341PFAM: YadA domain protein; Hep_Hag repeat- containing protein; Haemagluttinin domain protein; KEGG: cha:CHAB381_0794 outer membrane protein. (563 aa)    
Predicted Functional Partners:
Smon_0176
PFAM: Haemagluttinin domain protein; Hep_Hag repeat- containing protein; KEGG: hsm:HSM_1022 YadA domain-containing protein.
  
     0.774
Smon_0689
Hypothetical protein.
  
     0.551
Smon_0743
Shikimate 5-dehydrogenase-like protein; KEGG: pub:SAR11_0341 shikimate 5-dehydrogenase.
  
    0.492
Smon_1082
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: gsu:GSU2268 outer membrane protein, putative.
  
     0.475
Smon_1340
Hypothetical protein.
       0.462
Smon_0584
KEGG: pca:Pcar_1610 hypothetical protein.
  
     0.457
Smon_1342
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ade:Adeh_4127 alpha amylase, catalytic region.
       0.415
Smon_1129
TIGRFAM: conserved hypothetical protein; KEGG: bcr:BCAH187_A0963 putative ABC transporter, permease protein.
  
     0.404
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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