Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Smon_1389KEGG: ABC transporter family protein. (52 aa)    
Predicted Functional Partners:
Smon_0832
PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_0837 lipoprotein releasing system, transmembrane protein, LolC/E family.
  
 
 0.743
Smon_0748
PFAM: protein of unknown function DUF214; KEGG: lpc:LPC_0234 hypothetical protein.
  
 
 0.593
Smon_1390
KEGG: hypothetical protein.
  
    0.521
tmcAL
Cytidyltransferase-related domain protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
       0.509
Smon_1392
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bha:BH1481 NADPH dehydrogenase NamA.
       0.509
Smon_0697
PFAM: protein of unknown function DUF214; KEGG: bcy:Bcer98_3785 hypothetical protein.
  
 
 0.493
Smon_0695
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cco:CCC13826_1256 membrane fusion protein (MFP) family auxiliary transport protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.484
msrA
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.449
Smon_0838
KEGG: hypothetical protein.
   
 
 0.425
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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