Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Smon_1406Coproporphyrinogen dehydrogenase; KEGG: bcb:BCB4264_A0926 putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (457 aa)    
Predicted Functional Partners:
uppP
Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
  
 0.830
Smon_1405
Hypothetical protein.
       0.815
Smon_1401
TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: ban:BA5646 HAD superfamily hydrolase.
  
    0.786
Smon_1402
KEGG: plu:plu2691 proline iminopeptidase (PIP); TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; Belongs to the peptidase S33 family.
       0.786
Smon_1403
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ftm:FTM_0928 protein of unknown function with predicted hydrolase and phosphorylase activity.
       0.786
Smon_1404
Hypothetical protein.
       0.786
Smon_1400
PFAM: PTS system Galactitol-specific IIC component; KEGG: phosphotransferase system enzyme subunit; K02775 PTS system, galactitol-specific IIC component.
       0.747
Smon_0300
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cco:CCC13826_1933 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.664
Smon_1408
PFAM: YadA domain protein; OmpA/MotB domain protein; Hep_Hag repeat-containing protein; Haemagluttinin domain protein; KEGG: hso:HS_1154 large adhesin.
       0.518
Smon_1257
TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: ppd:Ppro_2552 phosphodiesterase.
 
     0.489
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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