Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Smon_1416PFAM: protein of unknown function DUF87; KEGG: rce:RC1_3826 hypothetical protein. (617 aa)    
Predicted Functional Partners:
Smon_1417
KEGG: rsh:Rsph17029_3199 hypothetical protein.
 
 
   0.962
Smon_1419
Site-specific DNA-methyltransferase (adenine- specific); PFAM: DNA methylase N-4/N-6 domain protein; KEGG: bcr:BCAH187_A5299 DNA methylase domain protein.
 
     0.717
Smon_1418
PFAM: type III restriction protein res subunit; KEGG: bcr:BCAH187_A5300 type III restriction enzyme, res subunit family.
       0.677
Smon_1415
Hypothetical protein.
       0.408
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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