Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Huta_0010KEGG: hwa:HQ1188A hypothetical protein. (171 aa)    
Predicted Functional Partners:
Huta_0011
KEGG: nph:NP5214A hypothetical protein.
       0.986
Huta_0012
KEGG: hma:rrnAC1852 hypothetical protein.
       0.950
Huta_0013
KEGG: hma:rrnAC1851 hypothetical protein.
       0.950
Huta_0014
KEGG: nph:NP5206A transmembrane protein (homolog 5 to type II secretion system proteins TadC).
       0.950
Huta_0015
PFAM: type II secretion system protein E; KEGG: hwa:HQ1190A type II/IV secretion system proteins VirB11/TadA (ATPase).
       0.913
Huta_1199
KEGG: hsl:OE1416F hypothetical protein.
       0.878
Huta_0009
KEGG: hma:rrnAC1844 hypothetical protein.
       0.769
Huta_0214
KEGG: nph:NP5202A hypothetical protein.
       0.571
Huta_1198
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: nph:NP5218A sugar epimerase/dehydratase-like protein.
       0.571
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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