STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_0306KEGG: hma:rrnAC1398 hypothetical protein. (476 aa)    
Predicted Functional Partners:
Huta_0307
KEGG: hma:rrnAC1397 putative DNA binding.
       0.820
Huta_0989
Chromosome segregation ATPase-like protein; KEGG: hma:rrnAC1408 hypothetical protein.
  
     0.545
Huta_0305
PFAM: cytochrome c oxidase subunit III; KEGG: hma:rrnAC1399 cytochrome c oxidase polypeptide III.
       0.535
Huta_1094
PFAM: protein of unknown function DUF214; KEGG: hma:rrnAC1028 putative permease.
  
     0.523
taw2
Methyltransferase; S-adenosyl-L-methionine-dependent transferase that acts as a component of the wyosine derivatives biosynthesis pathway. Catalyzes the transfer of the alpha-amino-alpha-carboxypropyl (acp) group from S- adenosyl-L-methionine to 4-demethylwyosine (imG-14), forming 7- aminocarboxypropyl-demethylwyosine (wybutosine-86) at position 37 of tRNA(Phe).
  
     0.480
Huta_1552
PFAM: PilT protein domain protein; KEGG: hsl:OE1124R hypothetical protein.
  
     0.468
Huta_0829
KEGG: hsl:OE1124R hypothetical protein.
  
     0.458
Huta_1277
PFAM: regulatory protein AsnC/Lrp family; KEGG: hma:rrnAC3290 transcription regulator.
  
     0.456
Huta_1829
KEGG: hwa:HQ2520A hypothetical protein.
  
     0.451
Huta_1689
KEGG: hma:pNG6107 conjugation protein.
  
     0.437
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.