STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_0331PFAM: L-lactate permease; KEGG: hsl:OE6063F putative L-lactate permease. (563 aa)    
Predicted Functional Partners:
Huta_2438
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: hma:rrnAC2334 putative oxidoreductase.
 
  
 0.887
Huta_1469
TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: hma:rrnAC0556 sn-glycerol-3-phosphate dehydrogenase subunit C.
 
  
 0.790
Huta_0463
TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: ctc:CTC01998 L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
  
 0.668
Huta_1471
TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: hma:rrnAC0554 glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
   
 0.641
Huta_0361
PFAM: protein of unknown function DUF162; KEGG: hsl:OE6062R hypothetical protein.
 
  
 0.611
Huta_0201
PFAM: Na+/solute symporter; KEGG: hwa:HQ3326A sodium/pantothenate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.601
Huta_0332
PFAM: PHP domain protein; KEGG: nth:Nther_1995 histidinol phosphate phosphatase HisJ family.
 
     0.552
Huta_1805
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; biotin/lipoyl attachment domain- containing protein; KEGG: hsl:OE4116F dihydrolipoamide dehydrogenase (glycine cleavage system protein L and E3 component of branched-chain amino acid dehydrogenase).
   
  
 0.538
Huta_2099
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amt:Amet_4108 NADH dehydrogenase (quinone).
      
 0.532
Huta_2199
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: cdf:CD0401 electron transfer flavoprotein alpha-subunit.
 
   
 0.443
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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