STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_0360Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: nph:NP2146A hypothetical protein. (181 aa)    
Predicted Functional Partners:
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 
 0.995
rpl21e
PFAM: Ribosomal protein L21e; KEGG: hma:rrnAC0260 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
   0.959
rpl18e
PFAM: ribosomal protein L15; KEGG: nph:NP2836A 50S ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.
  
   0.957
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: hma:rrnAC1429 30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
   0.956
rps19p
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
   0.952
rps24e
PFAM: Ribosomal protein S24e; KEGG: hma:rrnAC2488 30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
   0.949
rps28e
PFAM: Ribosomal protein S28e; KEGG: nph:NP3662A 30S ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
  
   0.947
rps4
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
   0.940
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
   
   0.934
rps14
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.
  
   0.933
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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