STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_1007PFAM: FAD dependent oxidoreductase; KEGG: hsl:OE1699R oxidoreductase (geranylgeranyl hydrogenase homolog). (409 aa)    
Predicted Functional Partners:
Huta_2954
TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; tryptophan halogenase; Lycopene beta and epsilon cyclase; HI0933 family protein; KEGG: nph:NP4564A electron-transferring- flavoprotein dehydrogenase 2.
  
  
 
0.930
Huta_0881
TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: hma:rrnAC0657 p-hydroxybenzoate hydroxylase.
  
  
 
0.929
carS
Protein of unknown function DUF46; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
  
  
 0.917
Huta_0773
PFAM: FAD dependent oxidoreductase; KEGG: hma:rrnAC0359 4-hydroxybenzoate 3- monooxygenase.
  
     0.696
Huta_2197
KEGG: chy:CHY_2475 iron-sulfur cluster-binding protein FixX.
 
 
 0.588
htpX
PFAM: peptidase M48 Ste24p; KEGG: hma:rrnAC2906 heat shock protein HtpX; Belongs to the peptidase M48B family.
  
    0.532
Huta_2200
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: cpr:CPR_2285 electron transfer flavoprotein beta-subunit.
  
 
 0.506
Huta_0143
PFAM: Squalene/phytoene synthase; KEGG: hma:rrnAC2069 phytoene synthase.
 
  
 0.502
Huta_1005
Hypothetical protein; KEGG: fre:Franean1_6240 GDSL family lipase.
 
     0.453
Huta_2199
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: cdf:CD0401 electron transfer flavoprotein alpha-subunit.
  
 
 0.445
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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