STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_1235KEGG: bxe:Bxe_B2513 4,5-dihydroxyphthalate decarboxylase. (335 aa)    
Predicted Functional Partners:
Huta_1234
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmu:PM1455 AfuB.
 
     0.613
Huta_0176
PFAM: nitrite and sulphite reductase 4Fe-4S region; Rhodanese domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; SMART: Rhodanese domain protein; KEGG: nph:NP4004A ferredoxin--nitrite reductase 3.
     
 0.535
Huta_2099
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amt:Amet_4108 NADH dehydrogenase (quinone).
       0.527
Huta_1236
KEGG: bxe:Bxe_B2513 4,5-dihydroxyphthalate decarboxylase.
 
    
0.504
Huta_1027
PFAM: Luciferase-like monooxygenase; KEGG: hma:pNG7033 alkanal monooxygenase-like.
 
  
 0.484
mer
5,10-methylenetetrahydromethanopterin reductase; Catalyzes the oxidation of methyl-H(4)MPT to methylene- H(4)MPT.
 
  
 0.483
Huta_1231
PFAM: carbon monoxide dehydrogenase subunit G; KEGG: azc:AZC_2941 carbon monoxide dehydrogenase subunit G.
  
     0.468
Huta_2933
PFAM: NADPH-dependent FMN reductase; KEGG: hma:rrnAC0982 NADPH-dependent FMN reductase.
  
  
 0.457
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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