STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_1663TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hma:rrnAC2962 putative haloacid dehalogenase- like hydrolase. (213 aa)    
Predicted Functional Partners:
Huta_1052
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: hma:rrnAC1962 putative alpha-D-14-glucosidase.
 
  
 0.705
Huta_1664
KEGG: hma:rrnAC2115 hypothetical protein.
       0.563
Huta_1471
TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: hma:rrnAC0554 glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.560
Huta_1156
SPP-like hydrolase; Catalyzes the dephosphorylation of 2-phosphoglycolate.
 
  
 0.549
Huta_2626
Alanine--glyoxylate transaminase; PFAM: aminotransferase class V; KEGG: hwa:HQ2919A aminotransferase class V (serine-- pyruvate aminotransferase 2; alanine--glyoxylate aminotransferase 2).
     
 0.529
mre11
Metallophosphoesterase; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity; Belongs to the MRE11/RAD32 family.
       0.446
Huta_1805
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; biotin/lipoyl attachment domain- containing protein; KEGG: hsl:OE4116F dihydrolipoamide dehydrogenase (glycine cleavage system protein L and E3 component of branched-chain amino acid dehydrogenase).
  
 
 0.431
Huta_0650
KEGG: hma:rrnAC0342 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein.
 
    0.418
Huta_2278
PFAM: CoA-binding domain protein; KEGG: hma:rrnAC0888 succinyl-CoA synthetase.
       0.410
Huta_1103
TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: hma:rrnAC0342 1-phosphofructokinase.
 
    0.408
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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