STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_1766KEGG: hma:rrnAC2799 hypothetical protein. (59 aa)    
Predicted Functional Partners:
Huta_1767
PFAM: protein of unknown function DUF99; KEGG: hsl:OE3905F hypothetical protein; Belongs to the UPF0215 family.
       0.792
Huta_1768
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: hma:rrnAC2796 uracil DNA glycosylase superfamily protein.
       0.623
Huta_1765
PFAM: beta-lactamase domain protein; KEGG: nph:NP0092A hydrolase (hydroxyacylglutathione hydrolase) 8.
       0.582
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.