STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_1875PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hma:rrnAC0907 iron ABC transporter permease protein. (545 aa)    
Predicted Functional Partners:
Huta_1876
PFAM: extracellular solute-binding protein family 1; KEGG: hma:rrnAC0906 iron-binding protein.
 
 
 0.995
Huta_1874
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: nph:NP3648A spermidine/putrescine/iron ABC transporter ATP-binding protein.
 
 
  0.986
Huta_1234
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmu:PM1455 AfuB.
  
  
 
0.929
Huta_1237
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tpe:Tpen_1553 spermidine/putrescine ABC transporter ATPase subunit.
 
 
  0.917
Huta_1871
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: hsl:OE2509R oxidoreductase-like protein.
       0.792
Huta_1872
KEGG: hsl:OE2510R hypothetical protein.
       0.792
Huta_1873
KEGG: hsl:OE2338R hypothetical protein.
       0.792
Huta_1877
KEGG: hma:rrnAC0905 hypothetical protein.
       0.792
Huta_0390
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hsl:OE4359F thiamine ABC transporter ATP- binding protein.
 
    0.678
Huta_1233
Hypothetical protein; KEGG: cef:CE0448 putative ABC transporter substrate- binding protein.
  
  
 0.632
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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