STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_1972Protein of unknown function DUF650; Involved in DNA damage repair. (426 aa)    
Predicted Functional Partners:
Huta_1613
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
  
     0.665
Huta_1971
PFAM: transcriptional regulator TrmB; KEGG: hma:rrnAC0420 sugar-specific transcriptional regulator.
 
     0.651
nac
alpha-NAC related protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.
  
     0.650
dnaG
TOPRIM domain protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
     0.645
Huta_2018
CTP-dependent riboflavin kinase; PFAM: protein of unknown function DUF120; KEGG: hma:rrnAC3074 hypothetical protein.
  
     0.638
rpl18e
PFAM: ribosomal protein L15; KEGG: nph:NP2836A 50S ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.
  
     0.631
Huta_0622
PFAM: Protein of unknown function DUF655; KEGG: nph:NP3680A hypothetical protein.
  
     0.629
Huta_1077
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
  
     0.626
Huta_0342
PFAM: protein of unknown function DUF75; KEGG: hma:rrnAC0629 hypothetical protein.
  
     0.616
cca
tRNA cytidylyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
  
     0.611
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.