STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_2111PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: sus:Acid_4901 glycoside hydrolase family protein. (787 aa)    
Predicted Functional Partners:
Huta_1474
PFAM: ROK family protein; KEGG: hma:rrnAC0547 glucokinase.
     
 0.908
Huta_0863
PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase family protein.
     
  0.900
Huta_2443
KEGG: gtn:GTNG_1757 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel.
     
 0.800
Huta_3018
TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: tko:TK1831 galactokinase.
 
  
 0.596
Huta_1153
KEGG: bth:BT_3664 putative alpha-glucosidase.
  
     0.573
Huta_2700
KEGG: ote:Oter_4283 alpha/beta hydrolase domain- containing protein.
  
     0.569
Huta_0156
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: sus:Acid_5559 alpha-L-rhamnosidase.
  
     0.549
Huta_2110
TIGRFAM: glutaredoxin-like domain protein; PFAM: glutaredoxin; KEGG: fno:Fnod_0856 glutaredoxin-like domain- containing protein.
   
   0.540
Huta_2112
Hypothetical protein.
       0.519
Huta_0650
KEGG: hma:rrnAC0342 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein.
   
    0.503
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.