STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_2396PFAM: Fibronectin type III domain protein; PKD domain containing protein; glycoside hydrolase family 5; SMART: Fibronectin type III domain protein; PKD domain containing protein; KEGG: bld:BLi01883 hypothetical protein. (1050 aa)    
Predicted Functional Partners:
Huta_2393
PFAM: PKD domain containing protein; glycoside hydrolase family 5; SMART: PKD domain containing protein; KEGG: ote:Oter_4515 glycoside hydrolase family protein.
 
  
  0.966
Huta_2394
PFAM: Fibronectin type III domain protein; glycoside hydrolase family 5; SMART: Fibronectin type III domain protein; KEGG: cja:CJA_3369 cellulase, putative, cel5C.
 
  
0.906
Huta_2397
PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: eca:ECA4070 pectate lyase.
 
     0.827
Huta_0501
PFAM: PfkB domain protein; KEGG: cth:Cthe_0389 PfkB.
  
  
  0.826
Huta_2395
PFAM: glycoside hydrolase family 5; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: ote:Oter_3673 fibronectin type III domain- containing protein.
 
    
0.796
Huta_1961
Endo-1,4-beta-xylanase; KEGG: tfu:Tfu_1213 xylanase; PFAM: glycoside hydrolase family 11; Carbohydrate binding family 6; PKD domain containing protein; SMART: cellulose binding type IV.
  
     0.556
Huta_1962
Endo-1,4-beta-xylanase; KEGG: tfu:Tfu_1213 xylanase; PFAM: glycoside hydrolase family 11; Ricin B lectin; SMART: Ricin B lectin.
  
     0.548
Huta_2398
PFAM: Carbohydrate binding family 6; glycoside hydrolase family 5; Fibronectin type III domain protein; SMART: cellulose binding type IV; Fibronectin type III domain protein; KEGG: ote:Oter_3673 fibronectin type III domain- containing protein.
 
    
0.533
Huta_1477
Endo-1,4-beta-xylanase; KEGG: tfu:Tfu_2791 xylanase; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
 
   
 0.517
Huta_1112
KEGG: tma:TM0070 endo-1,4-beta-xylanase B; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
 
   
 0.513
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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