STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_2423PFAM: glycoside hydrolase family 43; KEGG: bfs:BF0292 putative exported endo-arabinase. (699 aa)    
Predicted Functional Partners:
Huta_1152
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: kra:Krad_3567 alpha-N-arabinofuranosidase.
  
     0.614
Huta_2422
KEGG: hma:rrnAC1696 hypothetical protein.
       0.554
Huta_0356
Hypothetical protein; KEGG: eca:ECA4070 pectate lyase.
  
     0.526
Huta_2700
KEGG: ote:Oter_4283 alpha/beta hydrolase domain- containing protein.
  
     0.521
Huta_0871
Alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; glycoside hydrolase family 67; KEGG: gtn:GTNG_1770 alpha-glucuronidase.
  
     0.485
Huta_2397
PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: eca:ECA4070 pectate lyase.
  
    0.482
Huta_2111
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: sus:Acid_4901 glycoside hydrolase family protein.
  
     0.480
Huta_1153
KEGG: bth:BT_3664 putative alpha-glucosidase.
  
     0.478
guaAA
GMP synthase, small subunit; Catalyzes the synthesis of GMP from XMP.
       0.447
Huta_0156
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: sus:Acid_5559 alpha-L-rhamnosidase.
  
     0.439
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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