STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_2449PFAM: glycoside hydrolase family 43; Ricin B lectin; SMART: Ricin B lectin; KEGG: bfs:BF0292 putative exported endo-arabinase. (537 aa)    
Predicted Functional Partners:
Huta_2450
PFAM: Ricin B lectin; SMART: Ricin B lectin; Parallel beta-helix repeat; KEGG: tfu:Tfu_1643 parallel beta-helix repeat- containing ricin B lectin.
 
    
0.796
Huta_1400
PFAM: glycoside hydrolase family 43; KEGG: cpy:Cphy_2028 glycoside hydrolase family protein.
 
     0.666
Huta_2699
PFAM: glycoside hydrolase family 43; KEGG: sco:SCO0118 xylosidase/arabinosidase.
  
     0.658
Huta_1152
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: kra:Krad_3567 alpha-N-arabinofuranosidase.
  
     0.581
Huta_2447
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; DNA polymerase X; Helix-hairpin-helix DNA-binding class 1; KEGG: hma:rrnAC0669 DNA polymerase IV.
       0.528
Huta_2448
KEGG: hwa:HQ1219A hypothetical protein.
       0.528
Huta_2700
KEGG: ote:Oter_4283 alpha/beta hydrolase domain- containing protein.
  
     0.523
Huta_0356
Hypothetical protein; KEGG: eca:ECA4070 pectate lyase.
  
     0.514
Huta_0871
Alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; glycoside hydrolase family 67; KEGG: gtn:GTNG_1770 alpha-glucuronidase.
  
     0.481
Huta_2451
PFAM: Rhomboid family protein; AN1-type Zinc finger protein; SMART: AN1-type Zinc finger protein; KEGG: hma:rrnAC0675 hypothetical protein.
       0.479
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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