STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_2477PFAM: sodium/calcium exchanger membrane region; KEGG: hma:rrnAC0706 Na+/Ca2+-exchanging protein. (448 aa)    
Predicted Functional Partners:
dtdA
Protein of unknown function DUF516; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.
 
    0.852
Huta_1318
PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: hwa:HQ3102A potassium transport protein KefC.
   
 
 0.628
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
    0.597
Huta_1877
KEGG: hma:rrnAC0905 hypothetical protein.
  
     0.480
Huta_0581
TIGRFAM: halocyanin domain protein; PFAM: blue (type 1) copper domain protein; KEGG: hma:rrnAC0735 halocyanin precursor-like.
  
    0.477
Huta_2479
KEGG: hma:rrnAC0708 hypothetical protein.
       0.470
Huta_2968
KEGG: nph:NP3926A copper ABC transporter permease.
  
     0.469
Huta_1873
KEGG: hsl:OE2338R hypothetical protein.
  
     0.459
Huta_2158
KEGG: hma:rrnAC1026 hypothetical protein.
  
     0.441
Huta_0577
KEGG: hma:rrnAC0731 cytochrome b(C-terminal)/b6.
  
     0.436
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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