STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_2699PFAM: glycoside hydrolase family 43; KEGG: sco:SCO0118 xylosidase/arabinosidase. (496 aa)    
Predicted Functional Partners:
Huta_1400
PFAM: glycoside hydrolase family 43; KEGG: cpy:Cphy_2028 glycoside hydrolase family protein.
  
  
 
0.902
Huta_2842
Beta-glucuronidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: sde:Sde_2632 HflK.
  
  
  0.852
Huta_0870
PFAM: Glucuronate isomerase; KEGG: tma:TM0064 glucuronate isomerase.
  
  
  0.824
Huta_0158
PFAM: Glucuronate isomerase; KEGG: trq:TRQ2_0883 glucuronate isomerase.
  
  
  0.823
Huta_0159
PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase family protein.
     
  0.800
Huta_1154
PFAM: L-arabinose isomerase; KEGG: hau:Haur_3664 L-arabinose isomerase.
     
  0.800
Huta_2449
PFAM: glycoside hydrolase family 43; Ricin B lectin; SMART: Ricin B lectin; KEGG: bfs:BF0292 putative exported endo-arabinase.
  
     0.658
Huta_0356
Hypothetical protein; KEGG: eca:ECA4070 pectate lyase.
  
     0.463
Huta_2397
PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: eca:ECA4070 pectate lyase.
  
     0.454
Huta_1961
Endo-1,4-beta-xylanase; KEGG: tfu:Tfu_1213 xylanase; PFAM: glycoside hydrolase family 11; Carbohydrate binding family 6; PKD domain containing protein; SMART: cellulose binding type IV.
 
     0.411
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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