STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_2808PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: hma:rrnAC0431 transmembrane oligosaccharyl transferase. (1045 aa)    
Predicted Functional Partners:
secE
Protein translocase SEC61 complex, gamma subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
 
   0.839
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
  
 
   0.815
rpl32e
PFAM: Ribosomal protein L32e; helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: hma:rrnAC1595 50S ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family.
  
  0.808
rpl31e
PFAM: Ribosomal protein L31e; KEGG: hwa:HQ3423A 50S ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
  
 
   0.755
Huta_0244
KEGG: hma:rrnAC1407 cytochrome oxidase subunit I- like.
  
   
 0.749
Huta_2950
PFAM: Protein of unknown function DUF63; KEGG: hma:rrnAC1003 hypothetical protein.
  
     0.744
rpl13
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.743
Huta_1611
KEGG: hma:rrnAC2713 signal sequence peptidase.
  
  
 0.738
rpl30
TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30; KEGG: nph:NP4896A 50S ribosomal protein L30P.
   
   0.736
Huta_1612
KEGG: hma:rrnAC2712 signal sequence peptidase.
  
  
 0.735
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.