STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uppSUndecaprenyl diphosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids. (309 aa)    
Predicted Functional Partners:
Huta_2956
PFAM: Polyprenyl synthetase; KEGG: pfu:PF1102 bifunctional short chain isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.960
Huta_2049
PFAM: Polyprenyl synthetase; KEGG: hma:rrnAC0081 geranylgeranyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.955
Huta_1426
PFAM: Polyprenyl synthetase; KEGG: hma:rrnAC3146 farnesyl-pyrrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.952
Huta_0143
PFAM: Squalene/phytoene synthase; KEGG: hma:rrnAC2069 phytoene synthase.
   
 
 0.815
nusA
NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.
 
    0.694
Huta_1973
PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: hma:rrnAC3170 M50 metallopeptidase.
 
    0.692
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
 
    0.656
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
  
 0.607
Huta_1977
PFAM: peptidase M50; KEGG: nph:NP2278A metalloprotease.
  
    0.582
Huta_2827
PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: nph:NP5064A cold shock protein.
  
    0.544
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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