STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_2845TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sru:SRU_1684 acetyl-CoA synthase. (671 aa)    
Predicted Functional Partners:
Huta_2278
PFAM: CoA-binding domain protein; KEGG: hma:rrnAC0888 succinyl-CoA synthetase.
 
  
 0.981
Huta_1523
KEGG: nph:NP1314A citrate (si)-synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase.
  
 0.978
Huta_2539
PFAM: Citrate synthase; KEGG: rxy:Rxyl_2557 citrate synthase.
  
 0.978
Huta_0597
PFAM: Thiolase; KEGG: hwa:HQ2307A acetyl-CoA C-acyltransferase.
  
 
 0.977
Huta_2848
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: hma:rrnAC1267 2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.945
Huta_0638
PFAM: pyruvate carboxyltransferase; KEGG: hma:rrnAC0329 2-isopropylmalate synthase 2.
 
 
 0.944
Huta_2847
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: hma:rrnAC1268 putative 2-ketoglutarate ferredoxin oxidoreductase (beta).
  
 
 0.943
Huta_1479
KEGG: mbu:Mbur_2155 pyruvate ferredoxin oxidoreductase subunit gamma; TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase.
  
 
 0.933
Huta_1480
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mka:MK0081 pyruvate:ferredoxin oxidoreductase, delta subunit.
   
 
 0.919
Huta_0897
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: nph:NP1232A oxoglutarate--ferredoxin oxidoreductase, alpha subunit.
  
 
 0.918
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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