STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Huta_2854PFAM: MscS Mechanosensitive ion channel; KEGG: smd:Smed_5647 MscS mechanosensitive ion channel. (314 aa)    
Predicted Functional Partners:
Huta_2853
PFAM: O-methyltransferase family 3; KEGG: hma:rrnAC1257 caffeoyl-CoA O- methyltransferase.
       0.588
Huta_2855
PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: hma:rrnAC1254 hypothetical protein.
       0.539
Huta_2760
PFAM: MscS Mechanosensitive ion channel; KEGG: hma:rrnAC0285 hypothetical protein.
  
     0.511
Huta_1318
PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: hwa:HQ3102A potassium transport protein KefC.
 
   
 0.477
Huta_1010
PFAM: NMD3 family protein; KEGG: hma:rrnAC2903 putative nonsense mediated mRNA decay protein.
   
    0.459
Huta_2856
KEGG: hma:rrnAC1253 hypothetical protein.
       0.428
Huta_0300
KEGG: hma:rrnAC1105 hypothetical protein.
  
     0.421
Huta_2852
CheC, inhibitor of MCP methylation; PFAM: CheC domain protein; KEGG: hma:rrnAC1258 chemotaxis protein CheC.
       0.416
Your Current Organism:
Halorhabdus utahensis
NCBI taxonomy Id: 519442
Other names: H. utahensis DSM 12940, Halorhabdus utahensis AX-2, Halorhabdus utahensis DSM 12940, Halorhabdus utahensis str. DSM 12940, Halorhabdus utahensis strain DSM 12940
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