STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspDGeneral secretion pathway protein D. (731 aa)    
Predicted Functional Partners:
gspC
General secretion pathway protein C.
 
 
 0.997
gspG
General secretion pathway protein G.
  
 0.983
gspF
General secretion pathway protein F.
 
  
 0.964
gspJ
General secretion pathway protein J.
 
  
 0.961
gspE
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.958
SFV20926.1
General secretion pathway protein K.
 
   
 0.950
gspI
General secretion pathway protein I.
 
  
 0.947
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.898
gspH
Type II transport protein GspH.
 
  
 0.867
SFV20930.1
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.863
Your Current Organism:
Idiomarina donghaiensis
NCBI taxonomy Id: 519452
Other names: CGMCC 1.7284, I. donghaiensis, Idiomarina donghaiensis (Wu et al. 2009) Taborda et al. 2010, JCM 15533, Pseudidiomarina donghaiensis, Pseudidiomarina donghaiensis Wu et al. 2009, Pseudidiomarina sp. 908033, strain 908033
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.