STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV24299.1DNA adenine methylase. (288 aa)    
Predicted Functional Partners:
SFV24302.1
ElaA protein.
       0.860
rsmJ
16S rRNA (guanine1516-N2)-methyltransferase; Specifically methylates the guanosine in position 1516 of 16S rRNA.
       0.855
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
  
 0.824
SFV24309.1
Hypothetical protein.
       0.803
SFV24307.1
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.
       0.773
mutH
DNA mismatch repair protein MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family.
  
   
 0.746
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
    0.718
SFV24276.1
Methionine repressor, MetJ; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis.
  
     0.679
SFV23527.1
Hypothetical protein.
  
     0.538
SFV24132.1
DNA (cytosine-5)-methyltransferase 1.
 
   
 0.521
Your Current Organism:
Idiomarina donghaiensis
NCBI taxonomy Id: 519452
Other names: CGMCC 1.7284, I. donghaiensis, Idiomarina donghaiensis (Wu et al. 2009) Taborda et al. 2010, JCM 15533, Pseudidiomarina donghaiensis, Pseudidiomarina donghaiensis Wu et al. 2009, Pseudidiomarina sp. 908033, strain 908033
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