STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR36486.1Putative adhesin. (315 aa)    
Predicted Functional Partners:
SFR36472.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.803
SFR36478.1
Hypothetical protein.
       0.779
SFR55179.1
Tetratricopeptide repeat-containing protein.
  
     0.694
SFR58841.1
Cell wall-active antibiotics response 4TMS YvqF.
 
  
 0.670
SFR49010.1
Protein of unknown function.
  
     0.598
SFR40774.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
     0.586
SFR36494.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
       0.582
SFR49435.1
2OG-Fe(II) oxygenase superfamily protein.
  
     0.577
SFR37991.1
Multidrug efflux pump subunit AcrB.
  
     0.549
SFR37000.1
Membrane-bound lytic murein transglycosylase D.
    
   0.532
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.