STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR37545.1Catalase. (338 aa)    
Predicted Functional Partners:
SFR40545.1
FAD/FMN-containing dehydrogenase.
   
 0.911
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
    
 
 0.899
SFR49495.1
MaoC like domain-containing protein.
   
 0.857
SFR39944.1
Thioredoxin reductase (NADPH).
   
 
 0.802
SFR39636.1
Peptide-methionine (R)-S-oxide reductase.
   
 
 0.796
SFR56787.1
Putative intracellular protease/amidase.
  
 0.780
SFR42164.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 0.779
SFR56839.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
 
 0.775
SFR54928.1
1-Cys peroxiredoxin.
   
 
 0.751
SFR42148.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
   
 
 0.743
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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