STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR37850.1Transcriptional regulator, MarR family. (163 aa)    
Predicted Functional Partners:
SFR37862.1
Peptidoglycan-binding protein, CsiV.
       0.821
SFR37840.1
Hypothetical protein.
       0.796
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
    0.768
SFR40627.1
Nitroreductase.
  
 
  0.601
SFR44767.1
Sulfate adenylyltransferase subunit 2.
     
 0.591
SFR41998.1
Lactoylglutathione lyase.
    
 0.561
SFR37829.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
  
 0.557
SFR37818.1
Hypothetical protein.
       0.553
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.547
SFR37807.1
Hypothetical protein.
       0.545
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.