STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR40477.1Universal stress protein E. (309 aa)    
Predicted Functional Partners:
SFR51434.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
 
  
 0.744
SFR38530.1
Hypothetical protein.
  
     0.727
SFR55229.1
Hypothetical protein.
  
     0.672
ttcA
tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
       0.654
SFR36357.1
Hypothetical protein.
  
     0.650
SFR40452.1
Hypothetical protein.
  
    0.635
SFR40464.1
Cytochrome oxidase maturation protein, cbb3-type.
  
    0.635
SFR40470.1
Hypothetical protein.
       0.635
SFR40457.1
Cu2+-exporting ATPase.
       0.624
SFR43031.1
Lipoprotein NlpI.
  
     0.624
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.