STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR40802.14-hydroxyphenylpyruvate dioxygenase. (354 aa)    
Predicted Functional Partners:
SFR40794.1
Homogentisate 1,2-dioxygenase.
 
 0.999
SFR40780.1
Maleylacetoacetate isomerase.
 
  
 0.978
SFR40788.1
Fumarylacetoacetate (FAA) hydrolase.
 
  
 0.963
SFR40822.1
Phenylalanine 4-hydroxylase.
 
  
 0.950
SFR41555.1
3-methylcrotonyl-CoA carboxylase beta subunit.
  
 
 0.920
SFR40816.1
4a-hydroxytetrahydrobiopterin dehydratase.
  
  
 0.822
SFR41571.1
3-methylcrotonyl-CoA carboxylase alpha subunit.
  
 
 0.807
SFR41918.1
Aspartate aminotransferase.
   
 
 0.794
SFR36730.1
Oxaloacetate decarboxylase, alpha subunit.
  
 
  0.785
SFR43870.1
Cysteine sulfinate desulfinase/cysteine desulfurase.
    
 0.759
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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