STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR42219.1Hypothetical protein. (93 aa)    
Predicted Functional Partners:
SFR42226.1
Ribonuclease D.
 
     0.913
SFR42212.1
Membrane-bound lytic murein transglycosylase B.
       0.858
SFR42203.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
  
    0.837
SFR42194.1
Hypothetical protein.
 
     0.832
SFR42235.1
Long-chain acyl-CoA synthetase.
       0.804
SFR40515.1
High frequency lysogenization protein.
  
    0.660
SFR42243.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.606
SFR36321.1
Hypothetical protein.
  
     0.585
SFR42251.1
Outer membrane lipoprotein.
       0.584
rnt
RNAse T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
  
     0.554
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.