STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR43700.1Zn-dependent amino-or carboxypeptidase, M28 family. (542 aa)    
Predicted Functional Partners:
SFR43719.1
Dipeptidyl-peptidase-4.
 
    0.790
SFR43690.1
Outer membrane receptor for ferrienterochelin and colicins.
 
     0.752
SFR49368.1
Dipeptidyl-peptidase-4.
  
    0.682
SFR58600.1
Iron complex outermembrane recepter protein.
  
     0.676
SFR43707.1
Iron complex outermembrane recepter protein.
 
     0.656
SFR44579.1
TonB-dependent Receptor Plug Domain.
  
     0.653
SFR44508.1
Outer membrane cobalamin receptor protein.
  
     0.643
SFR50812.1
TonB dependent receptor.
  
     0.630
SFR44527.1
Outer membrane receptor for ferrienterochelin and colicins.
  
     0.621
SFR39683.1
Zinc carboxypeptidase.
  
     0.567
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.