STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR45196.1Group 4 capsule polysaccharide lipoprotein gfcB, YjbF. (242 aa)    
Predicted Functional Partners:
SFR45187.1
Capsule biosynthesis GfcC.
  
    0.816
SFR45178.1
UDPglucose 6-dehydrogenase.
  
    0.783
SFR45123.1
Glycosyl transferase family 2.
       0.679
SFR45134.1
Glycosyl transferase family 2.
       0.679
SFR45144.1
Hypothetical protein.
       0.679
SFR45151.1
Amylovoran biosynthesis glycosyltransferase AmsB.
       0.679
SFR45168.1
LPS O-antigen chain length determinant protein, WzzB/FepE family.
       0.679
SFR45203.1
Hypothetical protein.
       0.488
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.460
SFR45114.1
UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase.
       0.434
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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