STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR45232.1Type II secretion system (T2SS), protein N. (257 aa)    
Predicted Functional Partners:
SFR45243.1
General secretion pathway protein M.
 
   
 0.968
SFR45254.1
General secretion pathway protein L.
 
   
 0.956
SFR45281.1
General secretion pathway protein I.
 
   
 0.924
SFR45337.1
General secretion pathway protein C.
 
   
 0.923
SFR45291.1
Type II transport protein GspH.
 
     0.896
SFR45262.1
Type II secretion system protein K (GspK).
 
   
 0.887
SFR45328.1
General secretion pathway protein D.
 
     0.878
SFR45271.1
General secretion pathway protein J.
 
     0.877
SFR45300.1
General secretion pathway protein G.
     
 0.788
SFR45319.1
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
    0.782
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.