STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR45483.1Serine/threonine-protein kinase HipA. (400 aa)    
Predicted Functional Partners:
SFR45729.1
Helix-turn-helix domain-containing protein.
 
 
 
 0.964
SFR54666.1
Putative transcriptional regulator.
   
 
 0.861
SFR50197.1
Mobile mystery protein A.
 
 
 0.829
SFR45494.1
Helix-turn-helix.
       0.773
SFR50368.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
 
 
 0.767
SFR45504.1
Ferredoxin, 2Fe-2S.
       0.509
SFR50206.1
Mobile mystery protein B.
 
     0.421
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.