STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR46997.1MSHA biogenesis protein MshO. (284 aa)    
Predicted Functional Partners:
SFR46987.1
MSHA pilin protein MshD.
 
     0.954
SFR47016.1
Hypothetical protein.
 
     0.949
SFR47025.1
MSHA pilin protein MshA.
 
   
 0.835
SFR47006.1
MSHA biogenesis protein MshP.
       0.827
SFR47036.1
MSHA pilin protein MshB.
 
   
 0.813
SFR47102.1
Hypothetical protein.
 
   
 0.808
SFR47083.1
MSHA biogenesis protein MshL.
 
    0.807
SFR47112.1
Hypothetical protein.
 
    0.803
SFR47119.1
MSHA biogenesis protein MshI.
 
     0.801
SFR47064.1
Tetratricopeptide repeat-containing protein.
 
    0.781
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.