STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR47185.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (682 aa)    
Predicted Functional Partners:
SFR36755.1
Signal transduction histidine kinase.
 0.999
SFR41593.1
Diguanylate cyclase (GGDEF) domain-containing protein.
0.999
SFR44587.1
PAS domain S-box-containing protein.
  
 0.998
SFR45862.1
HPt (histidine-containing phosphotransfer) domain-containing protein; Manually curated.
  
 0.998
SFR58578.1
Na+/proline symporter.
  
 0.998
SFR36838.1
Response regulator receiver domain-containing protein.
 
 0.997
SFR47166.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.994
SFR54197.1
Diguanylate cyclase/phosphodiesterase with GAF sensor.
0.994
SFR43318.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.993
SFR44674.1
Diguanylate cyclase (GGDEF) domain-containing protein.
0.993
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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