Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR51745.1 | SFR51754.1 | SAMN04488070_1700 | SAMN04488070_1701 | ATP-dependent DNA helicase UvrD. | Putative hydrolase of the HAD superfamily. | 0.608 |
SFR51745.1 | SFR51777.1 | SAMN04488070_1700 | SAMN04488070_1703 | ATP-dependent DNA helicase UvrD. | Hypothetical protein. | 0.688 |
SFR51745.1 | SFR51796.1 | SAMN04488070_1700 | SAMN04488070_1705 | ATP-dependent DNA helicase UvrD. | Diaminopimelate decarboxylase. | 0.592 |
SFR51745.1 | SFR51808.1 | SAMN04488070_1700 | SAMN04488070_1706 | ATP-dependent DNA helicase UvrD. | Predicted small lipoprotein YifL. | 0.586 |
SFR51745.1 | SFR51836.1 | SAMN04488070_1700 | SAMN04488070_1709 | ATP-dependent DNA helicase UvrD. | uroporphyrinogen-III synthase. | 0.602 |
SFR51745.1 | cyaY | SAMN04488070_1700 | SAMN04488070_1707 | ATP-dependent DNA helicase UvrD. | CyaY protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | 0.427 |
SFR51745.1 | dapF | SAMN04488070_1700 | SAMN04488070_1704 | ATP-dependent DNA helicase UvrD. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.602 |
SFR51745.1 | hemC | SAMN04488070_1700 | SAMN04488070_1708 | ATP-dependent DNA helicase UvrD. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.457 |
SFR51745.1 | xerC | SAMN04488070_1700 | SAMN04488070_1702 | ATP-dependent DNA helicase UvrD. | Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.595 |
SFR51754.1 | SFR51745.1 | SAMN04488070_1701 | SAMN04488070_1700 | Putative hydrolase of the HAD superfamily. | ATP-dependent DNA helicase UvrD. | 0.608 |
SFR51754.1 | SFR51777.1 | SAMN04488070_1701 | SAMN04488070_1703 | Putative hydrolase of the HAD superfamily. | Hypothetical protein. | 0.890 |
SFR51754.1 | SFR51796.1 | SAMN04488070_1701 | SAMN04488070_1705 | Putative hydrolase of the HAD superfamily. | Diaminopimelate decarboxylase. | 0.797 |
SFR51754.1 | SFR51808.1 | SAMN04488070_1701 | SAMN04488070_1706 | Putative hydrolase of the HAD superfamily. | Predicted small lipoprotein YifL. | 0.769 |
SFR51754.1 | SFR51836.1 | SAMN04488070_1701 | SAMN04488070_1709 | Putative hydrolase of the HAD superfamily. | uroporphyrinogen-III synthase. | 0.536 |
SFR51754.1 | SFR51846.1 | SAMN04488070_1701 | SAMN04488070_1710 | Putative hydrolase of the HAD superfamily. | HemX protein. | 0.487 |
SFR51754.1 | cyaY | SAMN04488070_1701 | SAMN04488070_1707 | Putative hydrolase of the HAD superfamily. | CyaY protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | 0.630 |
SFR51754.1 | dapF | SAMN04488070_1701 | SAMN04488070_1704 | Putative hydrolase of the HAD superfamily. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.844 |
SFR51754.1 | hemC | SAMN04488070_1701 | SAMN04488070_1708 | Putative hydrolase of the HAD superfamily. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.540 |
SFR51754.1 | xerC | SAMN04488070_1701 | SAMN04488070_1702 | Putative hydrolase of the HAD superfamily. | Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.851 |
SFR51777.1 | SFR51745.1 | SAMN04488070_1703 | SAMN04488070_1700 | Hypothetical protein. | ATP-dependent DNA helicase UvrD. | 0.688 |
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