Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR49700.1 | SFR51836.1 | SAMN04488070_1485 | SAMN04488070_1709 | Porphobilinogen synthase; Belongs to the ALAD family. | uroporphyrinogen-III synthase. | 0.950 |
SFR49700.1 | hemA | SAMN04488070_1485 | SAMN04488070_0857 | Porphobilinogen synthase; Belongs to the ALAD family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.875 |
SFR49700.1 | hemC | SAMN04488070_1485 | SAMN04488070_1708 | Porphobilinogen synthase; Belongs to the ALAD family. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.998 |
SFR49700.1 | hemE | SAMN04488070_1485 | SAMN04488070_1426 | Porphobilinogen synthase; Belongs to the ALAD family. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.737 |
SFR49700.1 | hemL | SAMN04488070_1485 | SAMN04488070_2241 | Porphobilinogen synthase; Belongs to the ALAD family. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.997 |
SFR51836.1 | SFR49700.1 | SAMN04488070_1709 | SAMN04488070_1485 | uroporphyrinogen-III synthase. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.950 |
SFR51836.1 | SFR51846.1 | SAMN04488070_1709 | SAMN04488070_1710 | uroporphyrinogen-III synthase. | HemX protein. | 0.928 |
SFR51836.1 | SFR51853.1 | SAMN04488070_1709 | SAMN04488070_1711 | uroporphyrinogen-III synthase. | HemY protein. | 0.905 |
SFR51836.1 | cyaY | SAMN04488070_1709 | SAMN04488070_1707 | uroporphyrinogen-III synthase. | CyaY protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | 0.784 |
SFR51836.1 | dapF | SAMN04488070_1709 | SAMN04488070_1704 | uroporphyrinogen-III synthase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.655 |
SFR51836.1 | hemA | SAMN04488070_1709 | SAMN04488070_0857 | uroporphyrinogen-III synthase. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.679 |
SFR51836.1 | hemC | SAMN04488070_1709 | SAMN04488070_1708 | uroporphyrinogen-III synthase. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.994 |
SFR51836.1 | hemE | SAMN04488070_1709 | SAMN04488070_1426 | uroporphyrinogen-III synthase. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.845 |
SFR51836.1 | hemL | SAMN04488070_1709 | SAMN04488070_2241 | uroporphyrinogen-III synthase. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.749 |
SFR51846.1 | SFR51836.1 | SAMN04488070_1710 | SAMN04488070_1709 | HemX protein. | uroporphyrinogen-III synthase. | 0.928 |
SFR51846.1 | SFR51853.1 | SAMN04488070_1710 | SAMN04488070_1711 | HemX protein. | HemY protein. | 0.977 |
SFR51846.1 | cyaY | SAMN04488070_1710 | SAMN04488070_1707 | HemX protein. | CyaY protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | 0.706 |
SFR51846.1 | dapF | SAMN04488070_1710 | SAMN04488070_1704 | HemX protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.543 |
SFR51846.1 | hemC | SAMN04488070_1710 | SAMN04488070_1708 | HemX protein. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.916 |
SFR51846.1 | hemE | SAMN04488070_1710 | SAMN04488070_1426 | HemX protein. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.581 |
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